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Looking for some healthy baking inspiration? I’ve got you covered with 100 healthy baking recipes with everything from muffins and quick breads to cakes and cookies.

If you love baked goods you’re going to love today’s post because I’m sharing over 100 healthy baking recipes that your whole family will love!
From muffins and quick breads to cookies and brownies all of the recipes I’m sharing below are made with wholesome better-for-you ingredients, easy to make and absolutely delicious… trust me nobody will even be able to tell that they’re healthier.
Table of Contents
Baked Goods Made Healthier
In many baked goods recipes you’ll commonly see white flour, white sugar and butter or vegetable oil, but in true EBF fashion I always try to create recipes that are made healthier with wholesome, better-for-you ingredients. Here are some swaps you’ll typically see in the EBF recipes when it comes to baked goods:
- Flour – Instead of using white flour you’ll typically see whole wheat pastry flour, almond flour, oat flour or coconut flour being used here. All three options are great if you’re looking to incorporate more nutrients into your baking in place of a traditional all-purpose flour. I have a full guide on healthy flours to use if you’re interested in learning more.
- Sugar – Instead of using white, refined sugar, you’ll usually see me using maple syrup, honey, coconut sugar or medjool dates for a natural sweetener in my baked goods.
- Oil – When it comes to using oil in my baked goods I typically use coconut oil, olive oil or avocado oil instead of seed oil or butter, which all adds healthy fats and aren’t as processed as some of the alternatives. In a lot of recipes you’ll also see Greek yogurt, applesauce, sweet potato or pumpkin being used to replace some of the oil in recipes. This is a great way to keep baked goods moist without the need for a ton of oil.
Diet Preference Key
DF = Dairy-Free GF = Gluten-Free V = Vegan
* Any recipe labeled V is also dairy-free.
Muffins
Whether you’re in the mood for a fruity blueberry muffin or something more decadent like a chocolate muffin I’ve got you covered with loads of recipes for easy and healthy muffins with a variety of options to meet your dietary preferences.
- Healthy Chocolate Muffins DF
- Banana Blender Muffins GF, DF
- Protein Muffins GF, DF
- Apple Yogurt Muffins
- Chocolate Chip Yogurt Muffins
- Strawberry Yogurt Muffins
- Carrot Raisin Muffins GF, DF
- Coconut Flour Muffins GF
- Morning Glory Muffins DF
- Coconut Flour Muffins GF
- Morning Glory Muffins DF
- Oatmeal Banana Muffins GF, DF
- Blueberry Yogurt Muffins
- Healthy Pumpkin Muffins
- Flourless Pumpkin Muffins GF, DF
- Vegan Pumpkin Muffins V
- Lemon Poppy Seed Muffins GF, DF
- Blueberry Protein Muffins GF
- Healthy Apple Muffins
- Double Chocolate Protein Muffins GF
- Flourless Zucchini Muffins GF, DF
- Almond Flour Muffins GF, DF
- Strawberry Protein Muffins GF
- Healthy Chocolate Chip Muffins
- Vegan Blueberry Muffins V
- Healthy Oat Bran Muffins V
- Pumpkin Bran Muffins V
- Blueberry Cottage Cheese Muffins GF
Cookies
Love cookies, but want to make them a bit more nutritious for you and your family? You’re in for a treat because I have a variety for healthy cookies recipes to meet your needs.
- Coconut Flour Cookies GF, DF
- Oatmeal Breakfast Cookies GF, V
- Cottage Cheese Cookies GF
- Birthday Cake Cookies GF, DF
- Healthy Oatmeal Chocolate Chip Cookies DF
- Carrot Cake Breakfast Cookies V
- Oatmeal Scotchies GF
- Almond Cookies GF
- Healthy Chocolate Chip Cookies DF
- Peanut Butter Cookies GF, V
- Lemon Ricotta Cookies GF
- Protein Cookies GF, DF
- SunButter Cookies DF
- Almond Butter Espresso Cookies GF, V
- Lemon Almond Flour Cookies GF
- Banana Oatmeal Cookies GF, V
- Sweet Potato Breakfast Cookies GF, V
- Pumpkin Oatmeal Cookies GF, V
- S’mores Cookies GF, DF
- Almond Flour Chocolate Chip Cookies GF, V
- Healthy Peanut Butter Blossoms GF, V
- Pillowy Soft Pumpkin Cookies GF
- Dark Chocolate, Pistachio and Cardamom Cookies GF, V
- Flourless Peanut Butter Cookies GF, V
- Oatmeal Raisin Protein Cookies
- Healthy Monster Cookies GF
- Peanut Butter Oatmeal Cookies GF, DF
- Oatmeal Chia Cookies GF, V
- Chocolate Peanut Butter Cookies GF, DF
- Oatmeal Raisin Cookies GF, DF
- Oatmeal Date Cookies GF, V
Cakes + Cupcakes
Who says you can’t have your cake and eat it too — especially when it’s made with better-for-you ingredients? From rich chocolate cupcakes to healthy apple cake, these recipes will make you rethink what a healthy dessert can be. All of these recipes are healthy enough for an everyday dessert, but fancy enough to be served at celebrations like birthday parties and holidays.
- Healthy Pumpkin Cake GF
- Healthy Vanilla Cake
- Healthy Chocolate Cupcakes
- Healthy Vanilla Cupcakes
- Almond Flour Cupcakes GF, DF
- Oatmeal Carrot Cake GF, DF
- Sweet Potato Cupcakes GF
- Easy Strawberry Cake
- Healthy Apple Cake GF
- Flourless Chocolate Cake GF, DF
- Easy Mixed Berry Cake
- Healthy Birthday Cake GF, DF
- Pumpkin Coffee Cake
- Vegan Coffee Cake V
Quick Breads
Quick breads are the unsung heroes of the baking world—simple to make, versatile, and incredibly satisfying. They’re perfect for a quick breakfast, snack or even dessert.
- Healthy Pumpkin Bread DF
- Healthy Zucchini Bread DF
- Tahini Banana Bread GF, DF
- Strawberry Banana Bread
- Vegan Banana Bread V
- Healthy Gingerbread Loaf
- Healthy Fig Bread
- Coconut Flour Banana Bread GF, DF
- Healthy Lemon Loaf (Starbucks Copycat)
- Vegan Apple Bread V
- Vegan Zucchini Bread GF, V
- Cranberry Chocolate Chip Bread GF, DF
- Healthy Banana Bread
Brownies + Bars
Craving something decadent? These brownies and bars offer a range of recipes that deliver flavor while being mindful of nutritional content. From the richness of chocolate brownies to the nutty goodness of oat bars, you’ll find a variety of options that hit the sweet spot without going overboard.
- Healthy Carrot Cake Bars GF, DF
- Chickpea Brownies GF, V
- Pumpkin Brownies GF, DF
- Pumpkin Oatmeal Bars GF, V
- Apple Oatmeal Bars GF, V
- Zucchini Brownies GF, DF
- The Best Protein Brownies GF, DF
- Sweet Potato Brownies GF, V
- Healthy Lemon Bars GF, DF
- Fudgy Black Bean Brownies GF, DF
- Oat Flour Brownies GF, DF
- Pecan Pie Brownies GF
- Banana Oatmeal Bars V
- Pumpkin Protein Bars GF, V
- Berry Baked Oatmeal Bars GF, DF
- Healthy Apple Crumble Bars GF, V
- PB&J Bars GF, DF
- Healthy Blueberry Crumble Bars GF, V
- Peanut Butter Brownies
Brittany’s Picks
If you’re overwhelmed with options, here are a few of my personal favorites I make on repeat:
- Healthy Pumpkin Cake – Moist, cozy, and a total crowd-pleaser during fall (or honestly, any time).
- Banana Blender Muffins – Quick, foolproof, and kid-approved.
- Coconut Flour Banana Bread – A longtime reader favorite that’s naturally grain-free.
- The Best Protein Brownies – Rich and fudgy but packed with protein. So good.
- Oatmeal Chocolate Chip Bars – Classic and chewy with better-for-you ingredients. (recipe below)